Genome of the panther chameleon decoded

Genome of the panther chameleon decoded

by Alex Negro Science

In recent decades, genetic research has developed rapidly. Since 2009, the so-called high fidelity (HiFi) Pacbio sequencing method has been available for sequencing genomes. Nevertheless, relatively little is being done in the reptile field. There are only about a hundred so-called reference genomes for reptiles, and none at all for chameleons. Scientists from China have now published a reference genome for the panther chameleon (Furcifer pardalis).

For the analysis, a 5-year-old male captive panther chameleon was killed using isoflurane and then dissected. Different tissues were frozen in liquid nitrogen. Skeletal muscle was used for short genome DNA sequencing and HI-C sequencing. Liver was used for HiFi sequencing. RNA from heart, liver, spleen, testis, lung, kidney, and skin were used for transcriptome sequencing.

The genome size of the panther chameleon from the K-mer analysis is 1.61 gigabase pairs (Gbp), containing only 22 so-called contigs, sets of overlapping DNA. The karyotype contains 11 chromosomes, each consisting of one to four contigs. Ten out of eleven chromosomes have repeat sequences (TAACCC). BUSCO analysis demonstrated a high completeness of the genome. The genome can be viewed in the NCBI BioProject under the number PRJNA974816 and in ScienceDataBank.

Efficient and highly continuous chromosome-level genome assembly of the first chameleon genome
Hongxin Xie, Zixuan Chen, Shuai Pang, Weiguo Du
Genome Biology and Evolution 131, 2023
DOI: 10.1093/gbe/evad131

 

Picture: Alex Laube

Zoonotic potential of Yemen chameleons in Gran Canaria (Spain)

Zoonotic potential of Yemen chameleons in Gran Canaria (Spain)

by Alex Negro Science

The Canary Islands are located northwest of Africa near the coast of Morocco. On Gran Canaria, the second largest island, around 290 of over 1000 plant and animal species have been introduced, i.e. species that do not originally occur there. Since at least 2017, there have been free-living Veiled chameleons (Chamaeleo calyptratus) on Gran Canaria. Spanish scientists have now investigated whether this introduced chameleon population could have zoonotic potential.

They examined 40 Veiled chameleons that had previously been caught and killed by Red de Alerta Temprana de Canarias para la Detección e Intervención de Especies Exóticas Invasoras in Arucas. 36 of the chameleons were adults, four were juveniles. Intestinal contents were taken from each chameleon and analysed for the presence of different bacteria using various methods.

At least one of the bacteria sought was found in 28 of the Veiled chameleons. About half of the chameleons had Yersinia enterocolitica, which is the highest prevalence ever recorded for this bacterium in reptiles. The bacterium can cause diarrhoea in humans, among other things. It is unclear how the Veiled chameleons became infected with it – possibly via insects. 16 of the Veiled chameleons had salmonella in their intestines. Salmonella is very common in reptiles and has even been found in endemic species on Gran Canaria. Pseudomonas is also frequently found in reptiles and was detected in the intestines of 13 animals. Two Veiled chameleons were infected with Campylobacter, in one of them Campylobacter lari could be identified. This bacterium can rarely cause illness in humans, but no pathogenic potential for humans is known for the species otherwise common in reptiles. Campylobacter lari has so far been detected mainly in seafood and birds – it is possible that the Veiled Chameleons picked up the bacterium on the coast and did not bring it with them. Three Veiled chameleons had Escherichia coli, which in rare cases can lead to haemolytic uraemic syndrome (HUS) in humans. Another two chameleons had Listeria monocytogenes in their intestines, which can be dangerous for pregnant women if ingested with food. Five Veiled Chameleons had mycobacteria, several of which were found to be non-tuberculous infections. Staphylococci were detected in seven chameleons, but they are part of the normal skin flora. However, five isolates were positive for resistance to certain antibiotics, which is becoming an increasing problem with Staphylococcus aureus in humans. Most recently, Vibrio was detected in a single Yemen chameleon, some species of which can cause diarrhoea in humans. The bacterium has previously been detected in introduced anoles on Tenerife.

The authors state that there is a zoonotic potential for humans due to the handling of introduced Veiled Chameleons on Gran Canaria. However, the extent to which there is a real risk for humans as well as endemic species needs to be further investigated.

Study of zoonotic pathogens in alien population of Veiled Chameleons (Chamaeleo calyptratus) in the Canary Islands (Spain)
Román Pino-Vera, Néstor Abreu-Acosta, Pilar Foronda
Animals 13 (14), 2023
DOI:  10.3390/ani13142288

Chameleons in the Montagne des Français (Madagascar)

Chameleons in the Montagne des Français (Madagascar)

by Alex Negro Verbreitung Science

The Montagne des Français is a limestone massif with dry forest in northern Madagascar. It reaches up to 425 m above sea level and is within sight of the largest coastal town in the north, Antsiranana (French Diego Suarez). It has been a protected area since 2007. Scientists from Madagascar and the USA conducted counts of reptiles and amphibians in the Montagne des Français in 2014 and 2020.

Counts were made in January and May, i.e. during and at the end of the rainy season. In 2014, the focus was on the region around Andavakoera, while in 2020 it was on Sahabedara, Ampitiliantsambo, and Andavakoera. In order to find animals, the search was conducted during the day and at night along predefined paths, partly in suitable habitats, and partly in pitfall pits.

A total of 20 amphibian and 50 reptile species were recorded. Four new amphibians and one reptile were found for the first time in the Montagne des Français. The snake Langaha pseudoalluaudi was discovered again for the first time since 2007. Among the chameleons, there were minor new discoveries. Brookesia stumpffi could only be found in 2014, but no longer in 2020 – however, due to the relatively wide distribution of the species, this should not be a problem for the entire population. Brookesia tristis, one of the smallest chameleons in the world, was also only seen in 2014. Here, the body size, which makes it very difficult to find, and the time of year (May is relatively late for this species) could play a role. Brookesia ebenaui was detected in Andavakoera in 2014 and in Sahabedara in 2020. The two tree dwellers Furcifer oustaleti and Furcifer pardalis were found in both years in Andavakoera and Ampitiliantsambo. Furcifer petteri, on the other hand, was present at all the sites surveyed in both years.

Amphibians and reptiles of the “Montagne des Français”: Update of the distribution and regional endemicity
Herizo Oninjatovo Radonirina, Bernard Randriamahatantsoa, Rabibisoa Harinelina Christian Nirhy, Christopher J. Raxworthy
Preprint
DOI: 10.20944/preprints202306.1499.v1

Photo: Furcifer petteri on Madagascar, photographed by A. Laube

Twins in Veiled Chameleons in Latvia

Twins in Veiled Chameleons in Latvia

by Alex Negro Short messages Nachzuchten

The hatching of two pairs of twins of Veiled Chameleons (Chamaeleo calyptratus) in Latvia has been reported from Riga. The parents live at Riga Zoo and the young hatched in March 2022. The twins were two male and two female Veiled Chameleons, each pair in one egg. They came from a clutch of 85 eggs, of which 48 eventually hatched. All four young animals were active at first and accepted food. At the age of two months, one of the juveniles died, the remaining three were still alive in February 2023.

The article also gives a brief overview of cases of twins in reptiles from the existing literature.

A review of twinning in lizards and a report of Veiled Chameleon (Chamaeleo calyptratus) twin births
Alessandro di Marzio, Elza Birbele, Lucia Puchades, Andris Lazdiņš
Herpetology Notes 16: 471-476, 2023
DOI:

Photo: One of the twin pairs at hatching

Habitat of Furcifer labordi in Andranomena (Madagascar)

Habitat of Furcifer labordi in Andranomena (Madagascar)

by Alex Negro Science

Labordes’ chameleon (Furcifer labordi) has been known for some years as the world’s shortest-lived chameleon. Three scientists from Madagascar have now studied a previously relatively unexplored habitat of the species. The study was conducted in the Andranomena Special Reserve, located about 30 km north of the coastal town of Morondava in western Madagascar. The special reserve has a regrowth part as well as a relatively intact part of dry forest, which lies at altitudes ranging from sea level to 250 metres.

To estimate the population density of Furcifer labordi, the forest was divided into three transects each 150 m wide. At night, the chameleons were searched for with a torch and colour-marked with nail polish. The next day, a 5 x 5 m plot was marked around each site and at least 5 m away along the transect line. In all plots, the canopy cover was counted in percent, the thickness of the foliage layer on the ground and ground-covering plants in centimetres, the number of shrubs up to 1 m, the number of trees over 1 m and the number of felled and burnt trees. Five days after the first count, chameleons were again searched for and counted at night. In addition, insects were caught, counted and identified using light traps. Furthermore, raptor observations (Centropus toulou, Falco newtoni, Buteo brachyperus, Corvus albus and Accipiter francesii) were counted every 200 m along a 1400 m transect. Other predators such as snakes (Madagascarophis colubrinus, Leiohterodon modestus, Mimophis mahfalensis, Dromicodryas bernieri) were also counted by observation. Climatic data from the urban area of Morondava were recorded.

Statistical analyses showed that more Furcifer labordi were found in forest sections where the canopy was denser and the foliage layer on the ground was thicker, and where there were more trees overall. In the forest sections where no chameleons were found at all, significantly more felled trees were counted. As was to be expected, considerably fewer Furcifer labordi were found in the dry season than during the rainy season. Ten different families of insects were found, the most common being Homoptera (mainly cicadas), Coeloptera (beetles), Dermaptera (earwigs), and Lepidoptera (butterflies). Insect availability seemed consistent from February to May. More snakes were counted in February than in March, and the number of birds of prey did not differ throughout the observation period.

The authors consider whether the differences between the microhabitats preferred by Furcifer labordi and non-habitats could have an impact on the longevity of the species. Unfortunately, causality was not proven.

Note: This is a preprint publication. This means that no peer review has yet taken place and content may still change before final publication in a journal. Addendum: A discussion of the final paper after peer review can be found here.

Variation longitudinale de longévité de Furcifer labordi et analyse de facteurs à l’origine de sa longue durée de vie dans la reserve spéciale d’Andranomena-Morondava, Madagascar
Ahy Nirindrainiarivony Philibertin Honoré Djadagna, Achille Philippe Raselimanana, Lily-Arison René de Roland
ESI Preprints 18, 2023
DOI: 10.19044/esipreprint.6.2023.p700

How and when Veiled Chameleons show biotremors

How and when Veiled Chameleons show biotremors

by Alex Negro Science

Some chameleon species can vibrate like smartphones – most chameleon keepers know this. The best-known example of this ability is the Veiled Chameleon (Chamaeleo calyptratus). Two new articles by scientists from the USA now deal with what these vibrations are good for, how they occur, and how the Veiled Chameleon uses them in the first place.

Nine adult Veiled Chameleons (three females, six males) and six juvenile Veiled Chameleon (three females, three males) took part in the first experiments. Eleven of them were placed individually one after the other on a 77 cm long and 5 mm thick wooden stick. As soon as the chameleon sat in the middle, the wooden stick was subjected to vibrations of 25, 50, 150, 300, and 600 Hz. After each stimulus, a comparison was made to see whether the chameleon moved faster, slower, or the same as before. In order to motivate the young animals to move, a plant was placed near the end of the wooden stick. In addition, a small fan was used to imitate a light wind. For the second experiment, all 15 Veiled Chameleons were placed one after the other in a wooden box open at the top on a 122 cm long wooden stick. The animals were poked in the upper arm with a 27 G cannula. An acceleration sensor stuck to the helmet, or to the branch in the case of young animals, measured the reactions (vibrations) of the chameleons.

The results are exciting: Adult Veiled Chameleons reacted reliably to 50 and 150 Hz with “freezing”, i.e. complete immobility. Juveniles, on the other hand, reacted with this behaviour to other frequencies, namely 50 and 300 Hz. All adult Veiled Chameleons showed biotremors (vibrations). In the juveniles, the scientists could feel vibrations in all of them, but not all could be detected with the sensor. The vibrations were divided into two classes: “hoots” with an average of 7.5 dB and “mini-hoots” with -32.5 dB. The longer the larger vibrations lasted, the lower the frequency.

A second series of experiments used six adult Veiled Chameleons (four males, two females), four juvenile Veiled Chameleons, and one adult Chamaeleo gracilis. Two chameleons each were placed in a wooden box separated into two compartments by a plexiglass pane. Video recordings and accelerometers were used to measure their reactions to each other. Same-sex Veiled Chameleons, pairs of Veiled Chameleons, a Veiled Chameleon with a Chamaeleo gracilis and adult versus juvenile Veiled Chameleons were tested. The adult Veiled Chameleons showed vibrations in association with other adults in about 85% of the trials. The strength of the vibrations varied greatly from individual to individual. The clear trigger of the biotremors seemed to be visual contact with another chameleon. Threatening gestures and aggressive behaviour were more likely to cause vibrations. In the second series of experiments, a third variant of biotremors was discovered in addition to honking, rumbles.

Communication via biotremors in the Veiled Chameleon (Chamaeleo calyptratus): Part I – Biotremor production and response to substrate-borne vibrations
Kathryn L. Denny, Steve Huskey, Christopher V. Anderson, Michael E. Smith
Integrative and Comparative Biology, 2023
DOI: 10.1093/icb/icad085

Communication via biotremors in the Veiled Chameleon (Chamaeleo calyptratus): Part II – Social contexts
Kathryn L. Denny, Steve Huskey, Christopher V. Anderson, Michael E. Smith
Integrative and Comparative Biology, 2023
DOI: 10.1093/icb/icad084

Comparative anatomy of the forearms of different chameleons

Comparative anatomy of the forearms of different chameleons

by Alex Negro Tiermedizin Science

The anatomy of chameleons seems to be strongly adapted to their way of life. Tree-dwellers differ in many aspects from ground-dwellers. Several studies at the University of South Dakota this year have already looked at various anatomical aspects of chameleons. A new study is dedicated to the hands and arms.

For the investigation, the arms and hands of a total of 12 chameleons were isolated from existing microcomputer tomography scans and displayed in 3D. These were measured to about 30 different lengths and widths using software. Scans of the species Bradypodion damaranum, Bradypodion occidentale, Calumma hilleniusi, Calumma crypticum, Chamaeleo namaquensis, Chamaeleo zeylanicus, Furcifer balteatus, Furcifer campani, Rhampholeon spinosus, Rhampholeon temporalis, Trioceros goetzei goetzei and Trioceros werneri were evaluated. When selecting the species, care was taken to select one strictly tree-inhabiting chameleon and one more ground-inhabiting chameleon per genus.

The evaluation revealed that tree-dwelling chameleons show few differences in forelimb anatomy compared to ground-dwelling chameleons. Tree-dwelling species showed a majority of separated metacarpal bones 1-3, while ground-dwelling species showed fused metacarpal bones. Interestingly, this study differs from earlier studies by other authors, which yielded different results. The relatively small number of animals studied may be related to this. Larger studies could be helpful here.

Ecological and evolutionary drivers of chameleon forelimb variation
Ellie M. Schley
Honors Thesis 302 der Universität von South Dakota, 2023
DOI: gibt es nicht

Karyotypes in chameleons

Karyotypes in chameleons

by Alex Negro Science

Scientists from Great Britain and Italy have now studied the chromosomes of different chameleon species. They examined the karyotype of a total of 83 different chameleon species. Among them were 57 Madagascan chameleon species, of which 32 karyotypes were described for the first time ever. For Calumma brevicorne, Calumma fallax, Calumma parsonii and Furcifer verrucosus, there were even several animals each available for examination. The scientists found out that presumably the fusion of chromosomes has reduced the total number of chromosomes in the course of evolution in chameleons. Presumably, it was mainly microchromosomes (particularly small chromosomes) that fused.

Microchromosome fusions underpin convergent evolution of chameleon karyotypes
Marcello Mezzasalma, Jeffrey W Streicher, Fabio M Guarino, Marc E H Jones, Simon P Loader, Gaetano Odierna, Natalie Cooper
Evolution, Juni 2023
DOI: 10.1093/evolut/qpad097

 

YouTube live about Malagasy chameleons

YouTube live about Malagasy chameleons

by Alex Negro Live Stream Live lectures

On Saturday, 10 June 2023, there will be a live discussion on YouTube with the herpetologist Mark D. Scherz and Bill Strand from the Chameleon Academy in the USA. The topic will be the Malagasy chameleon Calumma brevicorne and its numerous relatives, some of which are extremely similar in appearance. Taxonomically, many chameleons of the brevicorne clade are not yet classifiable – possibly some undescribed new species are hiding among them? There will be an opportunity to ask questions about the topic live in the chat throughout the hour. This should be a very exciting talk round!

Chameleons & Coffee: Confusing Madagascar chameleons
Chameleon Academy YouTube Channel
Starting at 9.00 p.m.

Comparison of pelvic girdles in chameleons

Comparison of pelvic girdles in chameleons

by Alex Negro Science

The anatomy of chameleons is strongly adapted to their way of life. Tree-dwellers differ in many aspects from ground-dwellers. The pelvic girdle has been little studied anatomically in chameleons so far – a publication from the USA now deals with it in more detail.

For the study, the pelvic girdles of 22 chameleons were isolated from existing microcomputer tomography scans and displayed in 3D. These were measured to 16 different lengths and angles using software. Archaius tigris, Bradypodion damaranum, Calumma gallus, Calumma parsonii parsonii, Chamaeleo zeylanicus, Furcifer balteatus, Kinyongia matschiei, Kinyongia tavetana, Nadzikambia mlanjense and Trioceros quadricornis gracilior were assigned to tree dwellers. Brookesia brygooi, Chamaeleo namaquensis, Palleon nasus nasus, Rhampholeon temporalis and Rieppeleon brachyurus were attributed to ground-dwelling species. The species Bradypodion occidentale, Brookesia ebenaui, Chamaeleo anchietae, Furcifer campani, Rhampholeon spinosus, Rieppeleon kerstenii kerstenii and Trioceros goetzei goetzei were classified as semiarboreal. Mainly males were examined.

As expected, the evaluation showed that tree-dwelling chameleons had narrower, shorter girdles than ground-dwelling ones. The narrower pelvic girdle makes it easier to hide behind branches and flatten the body to the maximum. It also ensures that the body’s centre of gravity is closer to the branch and thus increases stability when climbing. Ground-dwelling chameleons, on the other hand, had larger and wider pelvic girdles. These allow them to step more quickly and provide greater stability when walking on ground surfaces.

How phylogeny and arboreality affect pelvic girdle anatomy of chameleons
Dakota J. John
Honors Thesis 299, University of South Dakota, 2023
DOI: none